#NEXUS 
[MacClade registered to David R. Maddison, University of Arizona]

BEGIN DATA;
DIMENSIONS  NTAX=8 NCHAR=50;

[!Data on cytochrome b from 

Thomas, R.H., W. Schaffner, A.C. Wilson, and S. PŠŠbo.  1989.  DNA phylogeny of the extinct marsupial wolf.  Nature, 340: 465-467.

This matrix contains only the variable sites.

See p. 22 of the MacClade book.]
FORMAT MISSING=? GAP=-  MATCHCHAR=.  DATATYPE=DNA ;
OPTIONS  MSTAXA=UNCERTAIN ;

MATRIX
[                       10        20        30        40        50]
[                       .         .         .         .         .]

Thylacinus     CTACTACAAACCGTCATCTAACTTCAATCATACATCATCCCAGAGATCGT   [50]
Sarcophilus    .CGT..T...A.A.T..TCCCACC...C.C.T...TCC.T.C...CCT..   [50]
Dasyurus       ...YC.T..GA.A.T...CC..CC...C.T....CTTCT..C...CCT.C   [50]
Echymipera     T.CA.......T....C.CC.ACC.C...G...CCT.AT.AC.G.TCT.C   [50]
Trichosurus    .C.AC...C..TACT.A.CT...CT.GC.CGTT.G..AT.A....CC...   [50]
Phalanger      ...AC.T.TT..ACA.C.....C.T..C.TCC.....ATTA.AC.CC.C.   [50]
Philander      T.TACT....A.A.T...CC..C.TT..T.....CT.CATA....C...C   [50]
Bos            TCT.CC.G....A..CA.CC..CC...C...C..A..AA..T.TAC...C   [50]
;
END;


BEGIN CODONS;
CODPOSSET UNTITLED = 
		1: 5 7 10 12-13 16 19 23 25 31 35 43 45, 
		2: 14 36 49, 
		3: 2-4 6 8-9 11 15 17-18 20-22 24 26-30 32-34 37-42 44 46-48 50;
GENCODE UNIVmtDNA
;
END;

BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;

END; 

BEGIN TREES; 

	TRANSLATE
		1	Thylacinus,
		2	Sarcophilus,
		3	Dasyurus,
		4	Echymipera,
		5	Trichosurus,
		6	Phalanger,
		7	Philander,
		8	Bos
	;
	TREE  * Fig._2_tree =  [&R] ((((1,(3,2)),((5,6),4)),7),8);

END;



BEGIN MACCLADE;
v 3.0
-1488718911
0000&/0
0
0
END;